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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_83198604_83199388_R

Intron Information:

Intron Rank:
18
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
83198604 - 83199388
Intron Length:
785

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCG|GTAAGCTGC
5'SS Class:
major
3'SS Sequence:
CTTATCCGTTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTTAT
U12 Branch Point Sequence:
CTTTTCTTATCC
Flanking Amino Acid:
RLISMAYGQIGMIQALGGFF
Intron Amino Acid Position:
1020

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79
0.68
1
64.4
42.8
Major BPS
91.4
1.03
0.7
79.9
34.9
Major PPT
76.2
0.59
0.9
73.5
36.9
Minor 5ss
44.7
-0.6
2.9
59.8
45
Minor BPS
69.7
0.6
1.6
77.51
38.8

Associated Gene:

Gene:
ATP1A1
Ensembl Gene ID:
ENSAPLG00000011285
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011885
83196079 - 83220297
24219