Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_83199513_83199860_R

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

83199513 - 83199860

Intron Length:

348

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

ATG|GTGAATGTC

5'SS Class:

major

3'SS Sequence:

GTCACCTTCAAAG|G

3'SS Class:

degenerate_major

U2 Branch Point Sequence:

TTCTAAC

U12 Branch Point Sequence:

TCACCTTCAAAG

Flanking Amino Acid:

ILCIDLGTDMVPAISLAYEQ

Intron Amino Acid Position:

979

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

75.4

0.6

70.8

Major BPS

84.6

0.86

0.8

83.9

22.3

Major PPT

59.9

0.22

1.1

58.8

Minor 5ss

31.3

-2.1

3.4

39.7

41.6

Minor BPS

-0.2

1.7

51.38

42.6

Associated Gene:

Gene:

ATP1A1

Ensembl Gene ID:

ENSAPLG00000011285

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000011885

83196079 - 83220297

24219