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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_83200016_83200443_R

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
83200016 - 83200443
Intron Length:
428

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGTTTA
5'SS Class:
strong_major
3'SS Sequence:
TTCCCTGCCCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTGAT
U12 Branch Point Sequence:
TAAGCAAGGATT
Flanking Amino Acid:
FASIVTGVEEGRLIFDNLKK
Intron Amino Acid Position:
927

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
93.9
1.04
0.7
89.2
17.6
Major BPS
78.8
0.71
1
67.6
40.6
Major PPT
73
0.52
0.9
64.9
36.3
Minor 5ss
38.3
-1.3
2.9
49
47.2
Minor BPS
40.1
-0.7
1.9
55.72
40

Associated Gene:

Gene:
ATP1A1
Ensembl Gene ID:
ENSAPLG00000011285
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011885
83196079 - 83220297
24219