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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_83200613_83201050_R

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
83200613 - 83201050
Intron Length:
438

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAAAAGA
5'SS Class:
strong_major
3'SS Sequence:
TCTTCATGACTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTTGCCTTATGT
Flanking Amino Acid:
LIIVEGCQRQGAIVAVTGDG
Intron Amino Acid Position:
871

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.9
0.75
0.9
74.1
36.4
Major BPS
100
1.24
0.5
100
0
Major PPT
65.2
0.34
1
59.7
40.7
Minor 5ss
32.2
-2
3
40.7
45.1
Minor BPS
61.7
0.45
2
83.49
43.8

Associated Gene:

Gene:
ATP1A1
Ensembl Gene ID:
ENSAPLG00000011285
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011885
83196079 - 83220297
24219