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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_83203131_83203602_R

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
83203131 - 83203602
Intron Length:
472

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGCTACT
5'SS Class:
major
3'SS Sequence:
GTTTGCGTTCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTCAC
U12 Branch Point Sequence:
AAGGCTTTCACG
Flanking Amino Acid:
VGKCRSAGIKVIMVTGDHPI
Intron Amino Acid Position:
775

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.6
0.58
1.2
75.3
40.8
Major BPS
77.7
0.69
1
81
30.2
Major PPT
75.7
0.58
1
65.7
45.4
Minor 5ss
42.5
-0.8
3
60.9
43.5
Minor BPS
47.4
-0.3
1.9
50.21
44.2

Associated Gene:

Gene:
ATP1A1
Ensembl Gene ID:
ENSAPLG00000011285
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011885
83196079 - 83220297
24219