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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_83204397_83204586_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
83204397 - 83204586
Intron Length:
190

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGCTCG
5'SS Class:
strong_major
3'SS Sequence:
TATTCCATCCTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTAAT
U12 Branch Point Sequence:
AAAACTTTAATT
Flanking Amino Acid:
IPFNSTNKYQLSIHKNANPS
Intron Amino Acid Position:
652

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.1
0.9
0.9
72.3
40.1
Major BPS
87.2
0.92
0.9
87.6
25.6
Major PPT
71.5
0.49
0.9
63.5
37.7
Minor 5ss
44.2
-0.6
2.8
56.7
47.6
Minor BPS
66.5
0.6
1.2
73.41
37.2

Associated Gene:

Gene:
ATP1A1
Ensembl Gene ID:
ENSAPLG00000011285
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011885
83196079 - 83220297
24219