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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_83204722_83206140_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
83204722 - 83206140
Intron Length:
1419

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGTTCC
5'SS Class:
strong_major
3'SS Sequence:
CTTTTTTCCTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTGAT
U12 Branch Point Sequence:
TGCCCTTTGATA
Flanking Amino Acid:
ANQENVPILKRAVAGDASES
Intron Amino Acid Position:
607

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.5
0.98
0.7
81
26.6
Major BPS
84
0.85
0.9
75
39.9
Major PPT
88.8
0.87
0.6
88.3
21.4
Minor 5ss
36
-1.6
2.8
44.6
43.4
Minor BPS
60.4
0.32
1.2
64.07
36.4

Associated Gene:

Gene:
ATP1A1
Ensembl Gene ID:
ENSAPLG00000011285
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011885
83196079 - 83220297
24219