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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_83207664_83208714_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
83207664 - 83208714
Intron Length:
1051

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTGAGTGAG
5'SS Class:
strong_major
3'SS Sequence:
TCCTTGTCTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
ACATATCTAACC
Flanking Amino Acid:
VPEGLLATVTVCLTLTAKRM
Intron Amino Acid Position:
504

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.3
0.74
0.9
68.7
38.1
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
80.9
0.7
0.8
72.6
37.7
Minor 5ss
27.1
-2.6
3
31.9
42.5
Minor BPS
48.9
-0.1
1.8
59.39
39.3

Associated Gene:

Gene:
ATP1A1
Ensembl Gene ID:
ENSAPLG00000011285
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011885
83196079 - 83220297
24219