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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_83208984_83209750_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
83208984 - 83209750
Intron Length:
767

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACGTGGC
5'SS Class:
strong_major
3'SS Sequence:
GTCTTTCTTCTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTAAA
U12 Branch Point Sequence:
ATTGTCTTAAAG
Flanking Amino Acid:
IAFFSTNCVEGTARGIVIRT
Intron Amino Acid Position:
414

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.6
0.81
1
71.4
40
Major BPS
77.8
0.69
1
78.2
31.8
Major PPT
80.8
0.69
0.8
73.5
37.1
Minor 5ss
32
-2.1
3.3
44
43.8
Minor BPS
62.9
0.27
1.6
66.56
41.1

Associated Gene:

Gene:
ATP1A1
Ensembl Gene ID:
ENSAPLG00000011285
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011885
83196079 - 83220297
24219