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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_83211448_83212490_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
83211448 - 83212490
Intron Length:
1043

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGG|GTAAGTAGA
5'SS Class:
strong_major
3'SS Sequence:
ACTTCTCTTCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTAAA
U12 Branch Point Sequence:
ATGCCTCTAAAA
Flanking Amino Acid:
HRKYGTDLSRGLTTARAAEI
Intron Amino Acid Position:
224

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.7
0.86
0.9
78
38.6
Major BPS
73
0.57
1
73.6
28.6
Major PPT
78.3
0.64
0.8
70.2
35.8
Minor 5ss
34.7
-1.7
2.6
34.1
41.4
Minor BPS
49.2
-0
1.7
61.46
38.1

Associated Gene:

Gene:
ATP1A1
Ensembl Gene ID:
ENSAPLG00000011285
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011885
83196079 - 83220297
24219