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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_83265196_83267416_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
83265196 - 83267416
Intron Length:
2221

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGCATT
5'SS Class:
strong_major
3'SS Sequence:
CTGCTTCTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTCTAAC
U12 Branch Point Sequence:
GAACCTCTAACA
Flanking Amino Acid:
KPIITAYHLQTVLFWTCEKY
Intron Amino Acid Position:
287

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.3
0.78
1
81.8
38.5
Major BPS
72.3
0.55
1
73.3
28.9
Major PPT
82.1
0.72
0.8
76.6
32
Minor 5ss
43.9
-0.7
3.2
65.5
45.8
Minor BPS
52.1
0.06
1.7
61.05
38

Associated Gene:

Gene:
MAB21L3
Ensembl Gene ID:
ENSAPLG00000012622
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013134
83264962 - 83279357
14396