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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_83267612_83268165_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
83267612 - 83268165
Intron Length:
554

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGCAGT
5'SS Class:
strong_major
3'SS Sequence:
CTTTTGTCCACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCAGAT
U12 Branch Point Sequence:
TGCTTCAGATCT
Flanking Amino Acid:
PSQEKVQCIKSLGFDLLARS
Intron Amino Acid Position:
222

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.2
0.85
0.9
77.8
38.7
Major BPS
74.1
0.6
1
69
38.9
Major PPT
81.3
0.7
0.8
75.9
32.8
Minor 5ss
35.7
-1.6
3
48.8
47
Minor BPS
46.1
-0.2
1.9
66.24
44.1

Associated Gene:

Gene:
MAB21L3
Ensembl Gene ID:
ENSAPLG00000012622
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013134
83264962 - 83279357
14396