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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_83268348_83271094_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
83268348 - 83271094
Intron Length:
2747

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCA|GTGAGTTTA
5'SS Class:
major
3'SS Sequence:
TGTTCCTTCACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATTAT
U12 Branch Point Sequence:
TTTACCTTTATT
Flanking Amino Acid:
EKSIISCNLSSKVTVLESFS
Intron Amino Acid Position:
161

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.5
0.58
1
74.2
32.1
Major BPS
84.7
0.86
1
74.3
40.7
Major PPT
81.8
0.72
0.8
76.1
32.5
Minor 5ss
40.5
-1.1
3
54.7
43.6
Minor BPS
72.5
0.79
1.6
89.05
35.4

Associated Gene:

Gene:
MAB21L3
Ensembl Gene ID:
ENSAPLG00000012622
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013134
83264962 - 83279357
14396