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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_83271387_83275746_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
83271387 - 83275746
Intron Length:
4360

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGAACA
5'SS Class:
strong_major
3'SS Sequence:
TGAACTCTCCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTAAT
U12 Branch Point Sequence:
TCTCTCTGAACT
Flanking Amino Acid:
NSGIHNENIKVLAPSQFLIT
Intron Amino Acid Position:
64

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.1
0.8
0.9
76.1
32.7
Major BPS
87
0.92
0.9
86.2
29.1
Major PPT
63.8
0.31
0.9
54.9
41
Minor 5ss
39.8
-1.1
2.8
50
46
Minor BPS
68.6
0.66
1.4
82.07
39.1

Associated Gene:

Gene:
MAB21L3
Ensembl Gene ID:
ENSAPLG00000012622
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013134
83264962 - 83279357
14396