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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_83275888_83279248_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
83275888 - 83279248
Intron Length:
3361

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGGCTT
5'SS Class:
strong_major
3'SS Sequence:
TTGGAACTGACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTCCAT
U12 Branch Point Sequence:
TTTTCCATAATA
Flanking Amino Acid:
EDVEIYIQSKVEPRHCLVSK
Intron Amino Acid Position:
17

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.9
0.96
0.8
82.5
37
Major BPS
77.3
0.68
1.2
86.7
32.3
Major PPT
61
0.25
1.1
54.6
44.7
Minor 5ss
36.7
-1.5
3.5
55.8
48.4
Minor BPS
78.5
0.89
1.5
88.54
28

Associated Gene:

Gene:
MAB21L3
Ensembl Gene ID:
ENSAPLG00000012622
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013134
83264962 - 83279357
14396