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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_83298959_83301957_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
83298959 - 83301957
Intron Length:
2999

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATATTCT
5'SS Class:
major
3'SS Sequence:
TTTTTCTTTCTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ACTTCAT
U12 Branch Point Sequence:
TCTACGTTAACC
Flanking Amino Acid:
MSLQALDGSQSGDKDNSAGS
Intron Amino Acid Position:
562

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.7
0.7
1
76.5
33
Major BPS
78.6
0.71
1
79.6
32.9
Major PPT
91.2
0.93
0.6
85.4
29.4
Minor 5ss
48.3
-0.2
2.6
68.1
42.9
Minor BPS
62.6
0.38
2.1
75.06
41.7

Associated Gene:

Gene:
SLC22A15
Ensembl Gene ID:
ENSAPLG00000012634
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013175
83279333 - 83328771
49439