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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_83302147_83304308_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
83302147 - 83304308
Intron Length:
2162

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTTTGTCTG
5'SS Class:
major
3'SS Sequence:
CTCTCGTTTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACTTAA
U12 Branch Point Sequence:
CTCTACTTAACT
Flanking Amino Acid:
GIIAPFVPSLKSVQWSLPYI
Intron Amino Acid Position:
499

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
66.5
0.39
1.2
59.2
45
Major BPS
74.4
0.61
0.9
63.9
34.9
Major PPT
81.5
0.71
0.8
75
33.4
Minor 5ss
40.4
-1.1
2.7
48.2
41.8
Minor BPS
74.2
0.84
1.5
84.76
41.8

Associated Gene:

Gene:
SLC22A15
Ensembl Gene ID:
ENSAPLG00000012634
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013175
83279333 - 83328771
49439