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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_83304382_83305273_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
83304382 - 83305273
Intron Length:
892

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATGCAA
5'SS Class:
major
3'SS Sequence:
GCTTTTTTCTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAATGAT
U12 Branch Point Sequence:
ATGTCACTGATT
Flanking Amino Acid:
YTSELYPTVIRNVGMGACSM
Intron Amino Acid Position:
474

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.5
0.67
1
67.7
39
Major BPS
76.8
0.67
1
66
40.9
Major PPT
81.1
0.7
0.7
80.5
31.5
Minor 5ss
30.1
-2.3
3.2
38.5
46.5
Minor BPS
49.3
0.02
1.9
71.3
39.7

Associated Gene:

Gene:
SLC22A15
Ensembl Gene ID:
ENSAPLG00000012634
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013175
83279333 - 83328771
49439