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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_83308356_83309034_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
83308356 - 83309034
Intron Length:
679

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTACTTAAA
5'SS Class:
major
3'SS Sequence:
TTATCTTTTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTTAT
U12 Branch Point Sequence:
TTATCTTTTACA
Flanking Amino Acid:
LGRTLIMMFTWFVCSLVYYG
Intron Amino Acid Position:
358

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70
0.47
1.1
68.9
37.2
Major BPS
84.1
0.85
0.9
75.3
39.4
Major PPT
88.8
0.87
0.7
83.9
30.8
Minor 5ss
34.2
-1.8
2.9
39.2
41.2
Minor BPS
71.5
0.67
1.5
80.03
35.5

Associated Gene:

Gene:
SLC22A15
Ensembl Gene ID:
ENSAPLG00000012634
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013175
83279333 - 83328771
49439