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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_83311061_83311974_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
83311061 - 83311974
Intron Length:
914

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAAATTT
5'SS Class:
strong_major
3'SS Sequence:
TATTTTATGTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TTTCTTTTATTT
Flanking Amino Acid:
CVGTAYWALAGSIGGLFFAV
Intron Amino Acid Position:
243

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.8
0.82
0.9
84
27.7
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
73.9
0.54
1
74.9
39.5
Minor 5ss
43.2
-0.7
3.3
64.8
46.5
Minor BPS
62.9
0.48
1.5
80.46
35.9

Associated Gene:

Gene:
SLC22A15
Ensembl Gene ID:
ENSAPLG00000012634
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013175
83279333 - 83328771
49439