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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_83312140_83313216_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
83312140 - 83313216
Intron Length:
1077

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAACCAGT
5'SS Class:
major
3'SS Sequence:
CATTGTTTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTAAA
U12 Branch Point Sequence:
CTCTTCTGAAAT
Flanking Amino Acid:
RFGRKKVYLTGFALDILFAI
Intron Amino Acid Position:
188

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.9
0.63
1.2
72.7
44.5
Major BPS
73.8
0.59
0.9
74
26.8
Major PPT
83.5
0.75
0.8
80.5
36.7
Minor 5ss
46.6
-0.3
2.7
67
43.9
Minor BPS
59.2
0.37
1.6
73.47
43.3

Associated Gene:

Gene:
SLC22A15
Ensembl Gene ID:
ENSAPLG00000012634
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013175
83279333 - 83328771
49439