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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_83316602_83328555_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
83316602 - 83328555
Intron Length:
11954

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGGGAG
5'SS Class:
strong_major
3'SS Sequence:
TCTTTCACTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTCAC
U12 Branch Point Sequence:
TTGTCTTTCACT
Flanking Amino Acid:
LCVLLAVLLQLYVATEAILI
Intron Amino Acid Position:
73

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.2
0.81
0.9
69.1
37.5
Major BPS
77.7
0.69
1
81
30.2
Major PPT
84.7
0.78
0.7
82.3
28
Minor 5ss
23.1
-3.1
3.2
27.7
44.2
Minor BPS
71.7
0.76
1.7
87.35
38.8

Associated Gene:

Gene:
SLC22A15
Ensembl Gene ID:
ENSAPLG00000012634
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013175
83279333 - 83328771
49439