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Intron Name: Anas_platyrhynchos_platyrhynchos_1_83401867_83413944_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

83401867 - 83413944

Intron Length:

12078

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTAAGCGCC

5'SS Class:

strong_major

3'SS Sequence:

TCCTCCTCCACAG|C

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TGCTAAT

U12 Branch Point Sequence:

TCCTCCTCCACA

Flanking Amino Acid:

QFQMTEMVLELAAQVLEPRS

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

88.3

0.9

74.6

37.4

Major BPS

79.3

0.73

1.1

77.9

34.9

Major PPT

77.5

0.62

0.7

71.8

26.4

Minor 5ss

37.6

-1.4

3.3

50.9

45.8

Minor BPS

54.6

0.14

67.11

45.4

Associated Gene:

Gene:

CASQ2

Ensembl Gene ID:

ENSAPLG00000011267

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000011761

83401633 - 83427980

26348