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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_83416368_83416863_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
83416368 - 83416863
Intron Length:
496

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAC|GTAAGATGC
5'SS Class:
major
3'SS Sequence:
TTTCACTTTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
CTTTTCTTCATT
Flanking Amino Acid:
IGYFKGEDSEHYKAFEEAAE
Intron Amino Acid Position:
178

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.3
0.55
1.3
66.9
40
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
85.7
0.8
0.8
77.2
36.7
Minor 5ss
39.7
-1.2
3.1
50.1
39.9
Minor BPS
66.5
0.6
1.7
82.74
39.5

Associated Gene:

Gene:
CASQ2
Ensembl Gene ID:
ENSAPLG00000011267
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011761
83401633 - 83427980
26348