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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_83417889_83420835_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
83417889 - 83420835
Intron Length:
2947

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACGTAGC
5'SS Class:
strong_major
3'SS Sequence:
GTCTTCTTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCCTCAA
U12 Branch Point Sequence:
GTGTCCTCAAAG
Flanking Amino Acid:
ELVEFVKEHKRATLRKLRPE
Intron Amino Acid Position:
246

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.1
0.85
0.9
76.4
39.6
Major BPS
73.1
0.58
1
73.8
32.3
Major PPT
86.7
0.82
0.7
84.4
30.6
Minor 5ss
35
-1.7
2.9
45.9
42.2
Minor BPS
57.6
0.1
1.8
62.16
45

Associated Gene:

Gene:
CASQ2
Ensembl Gene ID:
ENSAPLG00000011267
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011761
83401633 - 83427980
26348