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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_83420882_83423321_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
83420882 - 83423321
Intron Length:
2440

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTAAGCACA
5'SS Class:
strong_major
3'SS Sequence:
TTGTTGTTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CAATAAC
U12 Branch Point Sequence:
CCGTCAATAACA
Flanking Amino Acid:
LRPEDMFETWEDDMEGIHIV
Intron Amino Acid Position:
262

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.7
0.72
1
71.6
40.2
Major BPS
57.8
0.19
1.1
59.6
32.6
Major PPT
85.6
0.8
0.9
80.6
37
Minor 5ss
39.2
-1.2
2.8
41.9
44.5
Minor BPS
49.7
-0
1.9
61.24
44.6

Associated Gene:

Gene:
CASQ2
Ensembl Gene ID:
ENSAPLG00000011267
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011761
83401633 - 83427980
26348