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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_83423998_83424261_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
83423998 - 83424261
Intron Length:
264

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTGAGTGGC
5'SS Class:
strong_major
3'SS Sequence:
CTCACTCCCACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTCAC
U12 Branch Point Sequence:
TGTTTCTCACTC
Flanking Amino Acid:
VWIDPDDFPLLITYWEKTFK
Intron Amino Acid Position:
314

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.1
0.76
0.9
68.4
36.9
Major BPS
85
0.87
0.8
85.6
23
Major PPT
71.3
0.48
0.8
64.5
30.9
Minor 5ss
27.7
-2.6
3
31.6
37.6
Minor BPS
52.9
0.07
1.8
66.75
39.3

Associated Gene:

Gene:
CASQ2
Ensembl Gene ID:
ENSAPLG00000011267
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011761
83401633 - 83427980
26348