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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_83424337_83426776_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
83424337 - 83426776
Intron Length:
2440

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAC|GTGAGTAGC
5'SS Class:
major
3'SS Sequence:
GATCTCTTTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATCTGAT
U12 Branch Point Sequence:
CAAATCTGATCT
Flanking Amino Acid:
PQIGVVNVTDADSVWMEIRD
Intron Amino Acid Position:
339

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.7
0.58
1.3
72.2
39.5
Major BPS
82.5
0.81
0.8
71.4
36.6
Major PPT
79.8
0.67
0.9
73.3
36.8
Minor 5ss
32
-2.1
2.7
36
33.5
Minor BPS
46.4
-0.1
1.7
59.5
43.3

Associated Gene:

Gene:
CASQ2
Ensembl Gene ID:
ENSAPLG00000011267
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011761
83401633 - 83427980
26348