Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_83440171_83440742_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

3UTR

Intron Coordinates:

83440171 - 83440742

Intron Length:

572

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AGG|GTGGGTTGT

5'SS Class:

major

3'SS Sequence:

GCCCTTTTATCAG|T

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CTCTTAT

U12 Branch Point Sequence:

TTCCTCTTATTC

Flanking Amino Acid:

3UTR

Intron Amino Acid Position:

3UTR

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

72.6

0.53

1.1

65.8

42.7

Major BPS

79.1

0.72

69.3

38.4

Major PPT

73.9

0.54

0.9

72.9

36.1

Minor 5ss

34.6

-1.7

3.2

40.1

Minor BPS

58.2

0.24

1.6

66.92

39.3

Associated Gene:

Gene:

VANGL1

Ensembl Gene ID:

ENSAPLG00000011029

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000011488

83439171 - 83465238

26068