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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_83441618_83443650_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
83441618 - 83443650
Intron Length:
2033

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAAGCTG
5'SS Class:
major
3'SS Sequence:
TTTCTTTCTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTGTGAC
U12 Branch Point Sequence:
CCTCTTGTGACT
Flanking Amino Acid:
HERRVKKRRARLVVAVEEAF
Intron Amino Acid Position:
364

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79
0.68
1
66.7
44.4
Major BPS
71.3
0.53
1.2
63.1
44.5
Major PPT
92.4
0.95
0.6
88.6
20.8
Minor 5ss
33.7
-1.9
3.5
46.7
48.6
Minor BPS
46.4
-0.2
2
62.98
42.1

Associated Gene:

Gene:
VANGL1
Ensembl Gene ID:
ENSAPLG00000011029
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044910
83439755 - 83466986
27232
ENSAPLT00000011488
83439171 - 83465238
26068