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Intron Name: Anas_platyrhynchos_platyrhynchos_1_83443784_83446732_R

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

83443784 - 83446732

Intron Length:

2949

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

ATG|GTAGGTGAG

5'SS Class:

major

3'SS Sequence:

TCCCCTGCGGAAG|G

3'SS Class:

degenerate_major

U2 Branch Point Sequence:

TTTTCCT

U12 Branch Point Sequence:

TTTTCCTCCCCT

Flanking Amino Acid:

MAGLKVYNVDGPGNNASGQS

Intron Amino Acid Position:

320

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

77.1

0.64

41.1

Major BPS

39.5

-0.6

4.3

85.7

34.9

Major PPT

53.2

0.07

1.1

55.3

34.1

Minor 5ss

30.8

-2.2

3.4

35.9

42.5

Minor BPS

44.4

-0.3

3.7

84.08

42.8

Associated Gene:

Gene:

VANGL1

Ensembl Gene ID:

ENSAPLG00000011029

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000044910

83439755 - 83466986

27232

ENSAPLT00000011488

83439171 - 83465238

26068