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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_83446867_83461652_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
83446867 - 83461652
Intron Length:
14786

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAGGTACA
5'SS Class:
strong_major
3'SS Sequence:
TTTTTCCCCCTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTTTAT
U12 Branch Point Sequence:
TTTTGTTTATCT
Flanking Amino Acid:
ESRYYSLGHLSIQRAALVVL
Intron Amino Acid Position:
275

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.2
0.88
0.9
80.7
33.8
Major BPS
81.3
0.78
1.1
71.7
44.6
Major PPT
81.1
0.7
0.7
74.7
30.6
Minor 5ss
34.6
-1.7
2.9
43
44
Minor BPS
64.5
0.53
2
87.39
38.7

Associated Gene:

Gene:
VANGL1
Ensembl Gene ID:
ENSAPLG00000011029
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044910
83439755 - 83466986
27232
ENSAPLT00000011488
83439171 - 83465238
26068