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Intron Name: Anas_platyrhynchos_platyrhynchos_1_83462261_83465022_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

83462261 - 83465022

Intron Length:

2762

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAAGGAGG

5'SS Class:

strong_major

3'SS Sequence:

CTTTCTCCTTTAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

GTTTCAC

U12 Branch Point Sequence:

GATTGTTTCACC

Flanking Amino Acid:

NDASRTEEGQDDNWGETTTA

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

88.5

0.91

0.9

73.4

43.3

Major BPS

72.3

0.55

1.2

77.4

37.4

Major PPT

83.3

0.75

0.6

81.8

23.1

Minor 5ss

31.7

-2.1

3.1

39.7

45.9

Minor BPS

49.1

-0

2.2

63.86

41.8

Associated Gene:

Gene:

VANGL1

Ensembl Gene ID:

ENSAPLG00000011029

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000044910

83439755 - 83466986

27232

ENSAPLT00000011488

83439171 - 83465238

26068