Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_8346286_8347100_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

8346286 - 8347100

Intron Length:

815

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TAT|GTGGGTAGC

5'SS Class:

major

3'SS Sequence:

CTCCGCTCCCCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CTGTTAC

U12 Branch Point Sequence:

CACCTGTTACCT

Flanking Amino Acid:

MGRRCYLCCLKFPGGAR

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

69.7

0.46

1.1

65.2

40.8

Major BPS

59.1

0.23

1.2

52.7

42.9

Major PPT

70.2

0.46

0.8

60.9

35.2

Minor 5ss

31.7

-2.1

40.3

39.2

Minor BPS

43.3

-0.4

2.2

57.35

45.5

Associated Gene:

Gene:

SEMA3A

Ensembl Gene ID:

ENSAPLG00000012883

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000013989

8346264 - 8515401

169138