Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_83465150_83466692_R

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

83465150 - 83466692

Intron Length:

1543

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AGG|GTAAGGAAG

5'SS Class:

strong_major

3'SS Sequence:

TTGTTTGGAAAAG|G

3'SS Class:

degenerate_major

U2 Branch Point Sequence:

TGCTAAC

U12 Branch Point Sequence:

TCTCTGCTAACT

Flanking Amino Acid:

SGHSKKAHRQGSRDRHKSPR

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

80.4

0.72

69.6

42.7

Major BPS

69.4

0.48

1.1

69.6

35.5

Major PPT

57.2

0.16

1.2

60.3

44.1

Minor 5ss

31.2

-2.2

3.1

31.4

42.6

Minor BPS

48.1

-0

2.3

73.51

43.3

Associated Gene:

Gene:

VANGL1

Ensembl Gene ID:

ENSAPLG00000011029

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000044910

83439755 - 83466986

27232