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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_8347299_8398454_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
8347299 - 8398454
Intron Length:
51156

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGCCTG
5'SS Class:
strong_major
3'SS Sequence:
CTTTATCTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTGAC
U12 Branch Point Sequence:
TTACCTTTATCT
Flanking Amino Acid:
NVPRLKLSYKEMLESNNIIN
Intron Amino Acid Position:
38

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88
0.9
0.9
72.7
44.5
Major BPS
77.7
0.69
0.9
69.1
37.9
Major PPT
86.5
0.82
0.8
80.9
30.7
Minor 5ss
41.5
-0.9
3.1
55.8
48.4
Minor BPS
66.9
0.61
1.6
82.4
38.7

Associated Gene:

Gene:
SEMA3A
Ensembl Gene ID:
ENSAPLG00000012883
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013989
8346264 - 8515401
169138
ENSAPLT00000013411
8271191 - 8515401
244211
ENSAPLT00000046379
8346550 - 8515401
168852