Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_83485929_83486386_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

83485929 - 83486386

Intron Length:

458

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAA|GTGAGAAAC

5'SS Class:

major

3'SS Sequence:

TGAACTTTTGAAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

AAATAAT

U12 Branch Point Sequence:

TTCTCTTGAACT

Flanking Amino Acid:

IARAHRIGQHKPVKIIRLIG

Intron Amino Acid Position:

362

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

77.9

0.66

0.9

29.5

Major BPS

71.2

0.53

70.3

31.9

Major PPT

64.4

0.32

1.1

41.5

Minor 5ss

-2.3

2.9

35.1

34.7

Minor BPS

0.89

1.3

88.65

36.4

Associated Gene:

Gene:

CHD1L

Ensembl Gene ID:

ENSAPLG00000009976

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000010457

83479100 - 83499865

20766

ENSAPLT00000042644

83479100 - 83500729

21630