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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_83497614_83498880_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
83497614 - 83498880
Intron Length:
1267

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGTTTC
5'SS Class:
strong_major
3'SS Sequence:
CTCTTGACAACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTGAC
U12 Branch Point Sequence:
TTTCTCTTGACA
Flanking Amino Acid:
VLSNWKDELERFAPGLSFVT
Intron Amino Acid Position:
113

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
97.7
1.12
0.6
91.3
19.2
Major BPS
73.9
0.59
1
65.3
41.6
Major PPT
67.9
0.4
1
62.5
37.3
Minor 5ss
44.8
-0.6
2.8
61.1
43.8
Minor BPS
77.4
0.86
1.1
83.73
29.3

Associated Gene:

Gene:
CHD1L
Ensembl Gene ID:
ENSAPLG00000009976
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042644
83479100 - 83500729
21630