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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_83498988_83499752_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
83498988 - 83499752
Intron Length:
765

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGTGTCAC
5'SS Class:
strong_major
3'SS Sequence:
TCTTGCCTTCTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAGTAAA
U12 Branch Point Sequence:
TTGTTAGTAAAA
Flanking Amino Acid:
DEMGLGKTCQTISLLLYLTK
Intron Amino Acid Position:
78

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.2
0.76
0.9
70.1
35.9
Major BPS
67.4
0.43
1.1
67.9
36.3
Major PPT
78.4
0.64
0.8
70
36.6
Minor 5ss
35.2
-1.7
2.8
43.3
44.4
Minor BPS
46.8
-0.2
2.3
65.19
41.1

Associated Gene:

Gene:
CHD1L
Ensembl Gene ID:
ENSAPLG00000009976
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042644
83479100 - 83500729
21630