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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_83499866_83500611_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
83499866 - 83500611
Intron Length:
746

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTCAGTGCG
5'SS Class:
major
3'SS Sequence:
CTTTTATTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTTAT
U12 Branch Point Sequence:
GTAACTTTAACA
Flanking Amino Acid:
EEEVYRWGLTGIKLRPYQIE
Intron Amino Acid Position:
40

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.1
0.69
1.3
69.7
41.3
Major BPS
84.1
0.85
0.9
75.3
39.4
Major PPT
88.9
0.87
0.7
81.1
35.5
Minor 5ss
28.4
-2.5
2.9
33.2
41.8
Minor BPS
71.6
0.68
1.3
74.07
37.1

Associated Gene:

Gene:
CHD1L
Ensembl Gene ID:
ENSAPLG00000009976
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042644
83479100 - 83500729
21630