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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_83504958_83506029_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
83504958 - 83506029
Intron Length:
1072

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCG|GTAGGTAGC
5'SS Class:
major
3'SS Sequence:
TTCTGTCCTGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTGTAAC
U12 Branch Point Sequence:
AAGATCCCAACT
Flanking Amino Acid:
KGIKDYLDCYRSGKLTPSQV
Intron Amino Acid Position:
73

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.6
0.63
1.1
67.4
44
Major BPS
74.5
0.61
1.1
75.6
36.6
Major PPT
78.8
0.65
0.8
73.9
31.3
Minor 5ss
35.2
-1.7
3
45.6
42.8
Minor BPS
45.9
-0.2
1.8
61.46
41.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000009803
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010222
83501086 - 83514029
12944
ENSAPLT00000046427
83500841 - 83514029
13189
ENSAPLT00000030602
83500841 - 83514029
13189
ENSAPLT00000025520
83500841 - 83515029
14189