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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_83506151_83506596_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
83506151 - 83506596
Intron Length:
446

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAACGTCC
5'SS Class:
major
3'SS Sequence:
CCCCGCTGTGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
CTTTTTTTATTT
Flanking Amino Acid:
VQWDREQIMLMAEASTARYR
Intron Amino Acid Position:
114

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
68.1
0.43
1.2
60.1
39.7
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
66.6
0.37
1
60
35.4
Minor 5ss
43.7
-0.7
3.1
56.7
43
Minor BPS
63.5
0.5
1.6
78.46
39

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000009803
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010222
83501086 - 83514029
12944
ENSAPLT00000046427
83500841 - 83514029
13189
ENSAPLT00000030602
83500841 - 83514029
13189
ENSAPLT00000025520
83500841 - 83515029
14189