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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_83506690_83507535_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
83506690 - 83507535
Intron Length:
846

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTGAGGTCC
5'SS Class:
major
3'SS Sequence:
TCTTCTTGCTAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GAATAAT
U12 Branch Point Sequence:
TTAGGATGAATA
Flanking Amino Acid:
PVCVKEEFKVVPYHHRVGTV
Intron Amino Acid Position:
145

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.4
0.65
1
65.3
35
Major BPS
62.3
0.31
1.3
64.3
39.7
Major PPT
68.8
0.42
1.1
74.7
33.9
Minor 5ss
32.7
-2
3.2
39.1
40.7
Minor BPS
44.2
-0.4
2.1
58.19
41.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000009803
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010222
83501086 - 83514029
12944
ENSAPLT00000046427
83500841 - 83514029
13189
ENSAPLT00000030602
83500841 - 83514029
13189
ENSAPLT00000025520
83500841 - 83515029
14189