Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_83508679_83509334_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

83508679 - 83509334

Intron Length:

656

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAGTGCCC

5'SS Class:

major

3'SS Sequence:

CTTTTTTCTCCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

CTTGTAT

U12 Branch Point Sequence:

TTGTATCCAGCT

Flanking Amino Acid:

ASFCGVVGLKGTFGRISCHG

Intron Amino Acid Position:

255

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

67.4

0.41

1.1

56.1

39.8

Major BPS

59.2

0.23

1.4

61.1

45.5

Major PPT

91.5

0.93

0.6

84.7

30.2

Minor 5ss

30.7

-2.2

3.5

42.7

44.4

Minor BPS

42.9

-0.4

2.1

66.05

44.3

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000009803

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000046427

83500841 - 83514029

13189

ENSAPLT00000025520

83500841 - 83515029

14189

ENSAPLT00000010222

83501086 - 83514029

12944