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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_83509398_83509550_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
83509398 - 83509550
Intron Length:
153

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGAGGA
5'SS Class:
strong_major
3'SS Sequence:
TTCTCTTTTAAAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTTAA
U12 Branch Point Sequence:
ATTTTCTTAACC
Flanking Amino Acid:
YPLSYSTVSAGPICTSVADA
Intron Amino Acid Position:
276

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.8
0.94
0.8
75.2
35.1
Major BPS
82.2
0.8
0.8
71.9
35.8
Major PPT
80
0.68
1
81.7
27.6
Minor 5ss
29.8
-2.3
3.3
38.8
46.3
Minor BPS
86.6
1.13
0.9
88.52
26.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000009803
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030602
83500841 - 83514029
13189
ENSAPLT00000025520
83500841 - 83515029
14189
ENSAPLT00000010222
83501086 - 83514029
12944
ENSAPLT00000046427
83500841 - 83514029
13189