About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_83509809_83510504_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
83509809 - 83510504
Intron Length:
696

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGCCTATT
5'SS Class:
major
3'SS Sequence:
TCTTGTTCTCTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTAAAAT
U12 Branch Point Sequence:
GTGACTAAAATC
Flanking Amino Acid:
KLGVDWMFFKACDAEVLTIC
Intron Amino Acid Position:
332

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.4
0.53
1.2
78
38.3
Major BPS
58.2
0.21
1.2
65.3
36.8
Major PPT
80.9
0.69
0.8
73.6
37
Minor 5ss
40.7
-1
3.1
59.8
44.7
Minor BPS
44.2
-0.4
1.9
52.35
39.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000009803
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046427
83500841 - 83514029
13189
ENSAPLT00000030602
83500841 - 83514029
13189
ENSAPLT00000025520
83500841 - 83515029
14189
ENSAPLT00000010222
83501086 - 83514029
12944