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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_83510542_83511391_F

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
83510542 - 83511391
Intron Length:
850

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAAGAGC
5'SS Class:
strong_major
3'SS Sequence:
GTTCTGTGCTCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTCTAAC
U12 Branch Point Sequence:
TTGTGCTTCGCC
Flanking Amino Acid:
DAEVLTICEKAVEYLKSLGA
Intron Amino Acid Position:
344

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.1
0.71
1
70.2
40.3
Major BPS
66.8
0.42
1.2
69.6
35.5
Major PPT
71
0.47
1
68.7
42
Minor 5ss
32
-2.1
3.2
43
44.2
Minor BPS
39.6
-0.8
3.7
65.81
45.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000009803
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030602
83500841 - 83514029
13189
ENSAPLT00000025520
83500841 - 83515029
14189
ENSAPLT00000010222
83501086 - 83514029
12944
ENSAPLT00000046427
83500841 - 83514029
13189