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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_83511541_83512002_F

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
83511541 - 83512002
Intron Length:
462

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTACGTAGC
5'SS Class:
major
3'SS Sequence:
TTTTCTCTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GACTGAT
U12 Branch Point Sequence:
GAGCCAATGACT
Flanking Amino Acid:
PDFNKHFQEMNLETRATLAL
Intron Amino Acid Position:
394

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.3
0.67
1
69
41.9
Major BPS
65.8
0.39
1.2
57.3
41.7
Major PPT
94.1
0.99
0.5
92.8
16.8
Minor 5ss
35.2
-1.7
2.9
42.7
39.2
Minor BPS
45.8
-0.2
1.9
61.15
41.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000009803
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046427
83500841 - 83514029
13189
ENSAPLT00000030602
83500841 - 83514029
13189
ENSAPLT00000025520
83500841 - 83515029
14189
ENSAPLT00000010222
83501086 - 83514029
12944