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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_83512447_83513037_F

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
83512447 - 83513037
Intron Length:
591

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATTATTG
5'SS Class:
major
3'SS Sequence:
GATTCCTCCACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTGAT
U12 Branch Point Sequence:
CCAACCTCAACC
Flanking Amino Acid:
FTTVNCIVTPAVASTAPRIH
Intron Amino Acid Position:
440

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.4
0.55
1
67
39
Major BPS
91.3
1.03
0.7
79.6
35.6
Major PPT
72.6
0.51
0.9
65.4
35.8
Minor 5ss
47.7
-0.2
2.8
64.9
46.4
Minor BPS
55.6
0.16
1.7
60.34
44.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000009803
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025520
83500841 - 83515029
14189
ENSAPLT00000010222
83501086 - 83514029
12944
ENSAPLT00000046427
83500841 - 83514029
13189
ENSAPLT00000030602
83500841 - 83514029
13189