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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_83513392_83513918_F

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
83513392 - 83513918
Intron Length:
527

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGCATT
5'SS Class:
strong_major
3'SS Sequence:
TCTCATCTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTCTCAT
U12 Branch Point Sequence:
TCTCTCTCATCT
Flanking Amino Acid:
STAGLPISLQVMGKWWDEAV
Intron Amino Acid Position:
498

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
93.2
1.02
0.8
90.9
28.7
Major BPS
82.6
0.81
0.9
83.3
27.7
Major PPT
82
0.72
0.8
73.1
37
Minor 5ss
45.3
-0.5
2.9
66
45.2
Minor BPS
52.5
0.16
1.8
73.23
43.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000009803
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046427
83500841 - 83514029
13189
ENSAPLT00000030602
83500841 - 83514029
13189
ENSAPLT00000025520
83500841 - 83515029
14189
ENSAPLT00000010222
83501086 - 83514029
12944